LOC_Os03g60509
| RGAP LOCUS ID | LOC_Os03g60509 |
| RAP-DB ID | Os03g0819600 |
| Function | expressed protein |
Sub-cellular Localization Predictions |
|
1) WoLF-PSORT Prediction |
|
| localization | cyto |
| score | 7 |
2) CELLO Prediction |
|
| localization | Nuclear |
| score | 3.315 |
3) NUCPRED Prediction |
|
| localization | Non Nuclear |
| score | 0.54 |
4) Y-Loc Prediction |
|
| localization | Nuclear |
| score | 98.71 |
| confidence value | 0.46 |
| Number Of Software Predicting Nucleus | 2 |
| Seed Specific | No |
| Transcription factor category | |
Experimental evidence for subcellular localization |
|
| Published gene name (updated 1 January 2020) | gh1|OsCHI |
| Function assigned as per literature | OsCHI plays an essential role in the flavonoid pathway of rice hulls. |
| Subcellular localization as per literature | Endoplasmic reticulum |
| Cells used for localization experiment | Rice protoplasts |
| NUCLEAR or Not Nuclear | NOT NUCLEAR |
| PMID | 22286805 |
| Reference of localization | https://link.springer.com/article/10.1007%2Fs00425-012-1598-x |
| Is Subcellular localization evidence by author available ? | No |
Sequence Analysis |
|
| Number of PAT4 | 7 |
| Number of PAT7 | 1 |
| Number of Bipartite | 4 |
| Basic residues % | 0.2 |
| NLS score | 3.89 |
| Protein Sequence | >LOC_Os03g60509.1 protein MAAVSEVEVDGVVFPPVARPPGSGHAHFLAGAGLFVFALCVPCQWRSGNAVQANLLAGLIDPSCRCEGSGDRRQLHQVHGHRRVPGGGRGRAGAGQEVGR QVRRRARRRRRLLPRRRHRRFREVHEGDDDPAAHRRAVLGQGDGELRRGVEGRRRVHGRRGRGRGQVQGGLQAPQLPSGRVHPLHPLPARRPHRRVLQGL VGARGRRGGGGDREQGALRGGAGFHHRRARGLAGGEAEHSGPRLAAPEGGIHRRRGGGGARAGVRVKIELRINRASKSSSYTSCTLLLPSCLTMK |
GO Analysis |
|
| Presence of Splice variants | YES |