LOC_Os03g60110

Expression Profile

RGAP LOCUS ID LOC_Os03g60110
RAP-DB ID Os03g0815700
Function KH domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8.5

2) CELLO Prediction
localization Nuclear
score 3.256

3) NUCPRED Prediction
localization Non Nuclear
score 0.5

4) Y-Loc Prediction
localization Nuclear
score 81.78
confidence value 0.09
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SPIN1
Function assigned as per literature Flowering Time Control
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplast
NUCLEAR or Not Nuclear NUCLEAR
PMID 18586868
Reference of localization http://www.plantcell.org/content/20/6/1456
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.128
NLS score -0.47
Protein Sequence >LOC_Os03g60110.1 protein
MSGLYSPGFSPARNLSPQIRSNPTDVDSQYLAELLAEHQKLGPFMQVLPICSKLLSQEIMRVSSIVHNHGFGDFDRHRFRSPSPMSSPNPRSNRSGNGFS
PWNGLHQERLGFPQGTSMDWQGAPPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDPGKEDKLRGKPGYEHLS
DPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQDFYKRQQLRELAMLNSTLREDSPHPGSVSPFSNGGMKRAKTGQ

GO Analysis
1
GO Category Molecular Function
GO Term RNA binding
2
GO Category Biological Process
GO Term biological_process
3
GO Category Molecular Function
GO Term nucleic acid binding
Presence of Splice variants No