LOC_Os03g59640

Expression Profile

RGAP LOCUS ID LOC_Os03g59640
RAP-DB ID Os03g0811100
Function magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization mito
score 8

2) CELLO Prediction
localization Chloroplast
score 2.651

3) NUCPRED Prediction
localization Non Nuclear
score 0.57

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.96
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Chl1|OsChlD
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 3
Number of Bipartite 1
Basic residues % 0.125
NLS score 1.7
Protein Sequence >LOC_Os03g59640.1 protein
MAMATTALSASLPRLLPPRRRRFPTPSSSSPSAASTSTSRVVRLRAAAASAPSEVLDSTNGAIPSGKGGGGQQYGREYFPLAAVVGQDAIKTALLLGAID
REIGGIAISGKRGTAKTVMARGLHAMLPPIEVVVGSIANADPNYPEEWEEGLANQVQYDADGNLKTEIIKTPFVQIPLGITEDRLIGSVDVEASVKSGTT
VFQPGLLAEAHRGVLYVDEINLLDEGVSNLLLNVLTEGVNIVEREGISFRHPCKPLLIATYNPEEGSVREHLLDRIAINLSADLPMSFDDRVAAVDIATQ
FQESSKEVFKMVEEETEVAKTQIILAREYLKDVAISTEQLKYLVMEAIRGGCQGHRAELYAARVAKCLAAMEGREKVYVDDLKKAVELVILPRSILSDNP
QEQQDQQPPPPPPPPPPQDQDSQEDQDEDEEEDQEDDDEENEQQDQQIPEEFIFDAEGGIVDEKLLFFAQQAQRRRGKAGRAKNLIFSSDRGRYIGSMLP
KGPIRRLAVDATLRAAAPYQKLRREKDRDKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTSRDQVSIIPFRGDFA
EVLLPPSRSIAMARNRLEKLPCGGGSPLAHGLSTAVRVGLNAEKSGDVGRIMIVAITDGRANVSLKKSTDPEATSDAPRPSSQELKDEILEVAGKIYKAG
ISLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISAATKTALSDLKSS

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term plastid
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Molecular Function
GO Term catalytic activity
4
GO Category Molecular Function
GO Term nucleotide binding
5
GO Category Molecular Function
GO Term hydrolase activity
6
GO Category Biological Process
GO Term biosynthetic process
7
GO Category Biological Process
GO Term cellular process
Presence of Splice variants No