LOC_Os03g58600

Expression Profile

RGAP LOCUS ID LOC_Os03g58600
RAP-DB ID Os03g0800200
Function PAZ domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 6

2) CELLO Prediction
localization Nuclear
score 2.003

3) NUCPRED Prediction
localization Non Nuclear
score 0.39

4) Y-Loc Prediction
localization Chloroplast
score 6
confidence value 0.09
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) MEL1
Function assigned as per literature MEL1 is required for homologous chromosome synapsis in early meiosis
Subcellular localization as per literature Cytoplasm
Cells used for localization experiment pollen mother cell
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 24635777
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/tpj.12483
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.127
NLS score -0.13
Protein Sequence >LOC_Os03g58600.1 protein
MAYRGGGRGGRGGEQRPPYSGRGDVPGRGGGGGGGGAPPYRPASGFVWPPPGMTPRPGPPQPQYPRPGPPAVVYGAPMPAAHHQGAYQPGGVYRAPSPGV
PVIGGYARSTPVTIRAPPPSHSSAPAPYQPAAAAPAPSSSSTAPSATALAKEFEQKLFVSETALAPPAAVASAAAAPAGEASVESDKDLAPVSKKGLAHP
ARPGFGAAGKKVMIRANHFLVNVADNNLFHYDVSINPESKSRATNREVLNELIKLHGKTSLGGKLPAYDGRKSLYTAGSLPFESEEFVVKLIDPEKKDKE
RAEREYKITIRIAGRTDLYHLQQFLLGRQRDMPQETIQVLDVVLRESPSWNYVTVSRSFFSTQFGHRGDIGEGLECWRGYYQSLRPTQMGLSLNIDISAT
SFFKPVTVIQFVEEFLNIRDTSRPLSDRDRVKIKKALRGVRIETNHQEDQIRRYKITGITPIPMSQLIFPVDDNGTRKTVVQYFWDRYNYRLKYASWPCL
QSGSDSRPVYLPMEVCKIVEGQRYSKKLNDKQVTNILRATCQRPQQREQSIHEMVLHNKYTEDRFAQEFGIKVCNDLVSVPARVLPPPMLKYHDSGREKT
CAPSVGQWNMINKKMINGGTVDNWTCLSFSRMRPEEVQRFCGDLIQMCNATGMSFNPRPVVDVRSTNPNNIENALRDVHRRTSELLAREGKGGLQLLIVI
LPEVSGSYGKIKRVCETDLGIVSQCCLPRHASRPNKQYLENVALKINVKVGGRNTVLERAFIRNGIPFVSEVPTIIFGADVTHPPPGEDSASSIAAVVAS
MDWPEITKYRGLVSAQPHRQEIIEDLFSVGKDPVKVVNGGMIRELLIAFRKKTGRRPERIIFYRDGVSEGQFSHVLLHEMDAIRKACASLEEGYLPPVTF
VVVQKRHHTRLFPEVHGRRDMTDKSGNILPGTVVDRQICHPTEFDFYLCSHAGIQGTSRPTHYHVLYDENHFTADALQSLTNNLCYTYARCTRAVSVVPP
AYYAHLAAFRARYYVEGESSDGGSTPGSSGQAVAREGPVEVRQLPKIKENVKDVMFYC

GO Analysis
1
GO Category Biological Process
GO Term response to endogenous stimulus
2
GO Category Biological Process
GO Term response to stress
3
GO Category Biological Process
GO Term response to biotic stimulus
4
GO Category Biological Process
GO Term anatomical structure morphogenesis
5
GO Category Biological Process
GO Term multicellular organismal development
6
GO Category Cellular comBiological Processonent
GO Term cytoplasm
7
GO Category Molecular Function
GO Term nuclease activity
8
GO Category Biological Process
GO Term regulation of gene expression, epigenetic
9
GO Category Biological Process
GO Term cellular process
10
GO Category Biological Process
GO Term cell differentiation
11
GO Category Molecular Function
GO Term protein binding
12
GO Category Biological Process
GO Term response to abiotic stimulus
13
GO Category Cellular comBiological Processonent
GO Term cytosol
14
GO Category Molecular Function
GO Term RNA binding
15
GO Category Cellular comBiological Processonent
GO Term nucleus
16
GO Category Biological Process
GO Term metabolic process
17
GO Category Biological Process
GO Term reproduction
18
GO Category Biological Process
GO Term post-embryonic development
19
GO Category Biological Process
GO Term embryo development
Presence of Splice variants No