| RGAP LOCUS ID |
LOC_Os03g58570 |
| RAP-DB ID |
Os03g0799900 |
| Function |
WD domain, G-beta repeat domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
10 |
2) CELLO
Prediction
|
| localization |
Mitochondrial |
| score |
1.075 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.05 |
4) Y-Loc
Prediction
|
| localization |
Mitochondrion |
| score |
|
| confidence value |
0.35 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsPHF1L |
| Function assigned as per literature |
|
| Subcellular localization as per literature |
NA |
| Cells used for localization experiment |
|
| NUCLEAR or Not Nuclear |
|
| PMID |
|
| Reference of localization |
|
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.112 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os03g58570.1 protein
MAAEVGIGRATCAAWARRRGGGGPARLLVVYGRASTASSPPRIDLHAFDAGASAVAADPLVSFVMGHEEDDAPRAIAVHPSGDEFVCATAKGCRLFKLVT
EESSVHLISKDAPTLQSIGPQKCLSFSTDGAKFAVGGEDGHLRIFHWPDLNLLLGEPKAHKSFRDMDISLDSELLVSTSTDGSARIWNIDEGAPLVNLSR
SSDEKIECCCFSRDGNKPFLFCTLVKGHNVVTVVLDISNWKRIGYKRLLEKHISTLSVSLDGKYLAL |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
response to extracellular stimulus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
cell communication |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
endoplasmic reticulum |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
nucleotide binding |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 8 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| Presence of Splice variants |
No |
