| RGAP LOCUS ID |
LOC_Os03g58540 |
| RAP-DB ID |
Os03g0799700 |
| Function |
spo0B-associated GTP-binding protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
8 |
2) CELLO
Prediction
|
| localization |
Mitochondrial |
| score |
1.962 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.53 |
4) Y-Loc
Prediction
|
| localization |
Mitochondrion |
| score |
|
| confidence value |
0.56 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
TSV3 |
| Function assigned as per literature |
TSV3 plays important roles in chloroplast development at early leaf stage under cold stress |
| Subcellular localization as per literature |
Chloroplast |
| Cells used for localization experiment |
Nicotiana tabacumleaves |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
29162684 |
| Reference of localization |
http://www.g3journal.org/content/early/2017/11/21/g3.117.300249 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
4 |
| Number of PAT7 |
3 |
| Number of Bipartite |
0 |
| Basic residues % |
0.141 |
| NLS score |
1.84 |
| Protein Sequence |
>LOC_Os03g58540.1 protein
MPLLLHPRFPSSHAAACAHRAAAAHRDARPALRLPELHATRRRRNNVACRATRAREAPPQQQNTAAALSKEAHKYFDHAVVTVRAGDGGHGAVLAMPASP
STDAPKSPRRRSDKGKRSGVKKVSYKRNYDGSVALPMGGHGGDVVVYADEAEETLLRFHEKARYCAKRGGNVGATGTLSSRMHNGFAGETLRIPVPVGTV
VKRKKGAVLADLAHPGDEVIVARGGQGGISLIDVPEYRRRKAMVLSPNIMRDVSDRVLIHGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLSAITLAR
PDIADYPFTTLMPNLGRLGGDPALGALQFSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRVIVHVVDAAADDPVDDYKIVREELRMYNPQYLERPYV
VVLNKIDLPKAQDRLSSLAFEISSIGCEECDGNNTSEDSLNGNTGEHNTSSETKVEGGEKELRDYPRPQAVVGASVLKHIGIDEMLKEIRAALRKCFDHR
LPEP |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
catabolic process |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
hydrolase activity |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
embryo development |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 10 |
| GO Category |
Biological Process |
| GO Term |
reproduction |
|
| 11 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| Presence of Splice variants |
YES |
