LOC_Os03g58390

Expression Profile

RGAP LOCUS ID LOC_Os03g58390
RAP-DB ID Os03g0798200
Function zinc finger, C3HC4 type domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 4.048

3) NUCPRED Prediction
localization Nuclear
score 0.93

4) Y-Loc Prediction
localization Nuclear
score 94.37
confidence value 0.77
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSIRP2
Function assigned as per literature a positive regulator of salt and osmotic stress tolerance
Subcellular localization as per literature Nucleus
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 29285618
Reference of localization https://link.springer.com/article/10.1007%2Fs00425-017-2838-x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 3
Number of Bipartite 5
Basic residues % 0.192
NLS score 4.55
Protein Sequence >LOC_Os03g58390.1 protein
MQGATPGDAAGEEVGGGGDVVMVRRASVAACLTCPLCGRLLRDATTISECLHTFCRKCIHEEFVDKESCCCPTCNIDLGCAPLEKLRVDHSMQFVRSRIF
PFKRRKVENPEIICPVASPVKRKERSLSSLTIPAPQVSIQKCLTKRRTKASCLRNFPLHSTSRGSKDTSKKLGGWRPLGCQLKLGKDKKSLKSSVKDTNR
TKSKSGDTDDGAPASKAKAREPFTRYGRAAKRTGRKKLLMLKNKKKRFKAKQPSKKRRFRALWFYLLAAFDQRGVPTLPQLPAKYLRIKDVDLPASIIQK
YLAQKLNLSSETEVEVLCGGKVVNQGMTLHDLADCWLEKGPKSRMRSSVGSPATGFMVTLFYRRPDVDVSSSPAPPQPDTESCHS

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term response to abiotic stimulus
3
GO Category Molecular Function
GO Term protein binding
4
GO Category Biological Process
GO Term protein modification process
5
GO Category Molecular Function
GO Term binding
6
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants No