LOC_Os03g58160

Expression Profile

RGAP LOCUS ID LOC_Os03g58160
RAP-DB ID Os03g0795900
Function heat stress transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 4.475

3) NUCPRED Prediction
localization Nuclear
score 0.89

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 0.95
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category HSF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHsfA2e
Function assigned as per literature Role in environmental stress tolerance of crops
Subcellular localization as per literature Nucleus
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 18064488
Reference of localization https://link.springer.com/article/10.1007%2Fs00425-007-0670-4
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 5
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.115
NLS score 1.52
Protein Sequence >LOC_Os03g58160.1 protein
MNYRVVNPVKVESGPSTGVANGQPPRPMDGLADGGPPPFLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYGFR
KVDPDKWEFANEGFLRGQKHLLKSIKRRKPPNSSPSQQSLGSFLEVGHFGYEGEIDQLKRDKHLLMAEVVKLRQEQQNTKSDLQAMEQKLQGTEQKQQHM
MAFLSRVMHNPEFIRQLFSQSEMRKELEEFVSKKRRRRIDQGPELDSMGTGSSPEQVSQVMFEPHDPVDSLFNGVPSDLESSSVEANGGKAQQDVASSSS
EHGKIKPSNGELNEDFWEDLLHEGGLDEDTRNPAIDDMNLLSQKMGYLNSSSTKSPQ

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES