LOC_Os03g57790

Expression Profile

RGAP LOCUS ID LOC_Os03g57790
RAP-DB ID Os03g0791800
Function ubiquitin-conjugating enzyme, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6.5

2) CELLO Prediction
localization Nuclear
score 3.468

3) NUCPRED Prediction
localization Non Nuclear
score 0.56

4) Y-Loc Prediction
localization Nuclear
score 99.05
confidence value 0.68
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRad6
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.105
NLS score -0.04
Protein Sequence >LOC_Os03g57790.1 protein
MSTPARKRLMRDFKRLQQDPPAGISGAPHDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPVVRFVSRMFHPNIYADGSICLDILQNQWSPIY
DVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRKVREIVEQSWTAD

GO Analysis
1
GO Category Biological Process
GO Term response to abiotic stimulus
2
GO Category Biological Process
GO Term cellular component organization
3
GO Category Biological Process
GO Term protein modification process
4
GO Category Biological Process
GO Term protein metabolic process
5
GO Category Biological Process
GO Term catabolic process
6
GO Category Biological Process
GO Term cellular process
7
GO Category Cellular comBiological Processonent
GO Term cytosol
8
GO Category Biological Process
GO Term reproduction
9
GO Category Biological Process
GO Term post-embryonic development
10
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants YES