| RGAP LOCUS ID |
LOC_Os03g56950 |
| RAP-DB ID |
Os03g0782500 |
| Function |
phytochrome-interacting factor 4, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
14 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
4.681 |
3) NUCPRED
Prediction
|
| localization |
Nuclear |
| score |
0.92 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
100 |
| confidence value |
1 |
| Number Of Software Predicting Nucleus |
4 |
| Seed Specific |
No |
| Transcription factor category |
bHLH |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsPIL13|OsPIL1 |
| Function assigned as per literature |
Regulator of reduced internode elongation under drought conditions |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Rice protoplast cells |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
22984180 |
| Reference of localization |
http://www.pnas.org/content/pnas/109/39/15947.full.pdf |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
3 |
| Number of PAT7 |
2 |
| Number of Bipartite |
2 |
| Basic residues % |
0.09 |
| NLS score |
2.03 |
| Protein Sequence |
>LOC_Os03g56950.2 protein
MDGNARSAANQTKQIVTDNELVELLWHNGGVVAQPQAAQARVVSSSGRGQSASVLTGDDTETAAWFPDTLDDALEKDLYTQLWRSVTGDAFPAAAAAGPS
SHHAPPPDLPPPAARPPMRSGIGSSWTGDICSAFCGSNHIPETAAQRCRDAGAALPPERPRRSSTHDGAGTSSSGGSGSNFGASGLPSESASAHKRKGRE
DSDSRSEDAECEATEETKSSSRRYGSKRRTRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGMAPMMFPG
AHQFMPPMAVGMNSACMPAAQGLSHMSRLPYMNHSMPNHIPLNSSPAMNPMNVANQMQNIQLREASNPFLHPDGWQTVPPQVSGPYASGPQVAQQNQIPK
ASASTVLPNSGAEQPPTSDGI |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
response to external stimulus |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 7 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 10 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| Presence of Splice variants |
YES |
