LOC_Os03g56820

Expression Profile

RGAP LOCUS ID LOC_Os03g56820
RAP-DB ID Os03g0780800
Function fatty acid hydroxylase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 8

2) CELLO Prediction
localization PlasmaMembrane
score 3.629

3) NUCPRED Prediction
localization Non Nuclear
score 0.02

4) Y-Loc Prediction
localization Cytoplasm
score 76
confidence value 0.3
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsFAH2
Function assigned as per literature OsFAH2 is involved in plant immunity in rice
Subcellular localization as per literature Endoplasmic reticulum membrane
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27465023
Reference of localization http://www.plantcell.org/content/28/8/1966.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.092
NLS score -0.47
Protein Sequence >LOC_Os03g56820.1 protein
MMCDSVMQFRLGKMVVQEFTVDLNKPLVFQVGHLEERYQEWVHQPIVSKEGPRFFGNDVLEFLTRTKWFAVPTIWLPVVCWLLVKSIRMGHTIQEVGLMA
LFGIFIWTLIEYTLHRFLFHIETKTYWANTAHYLLHGCHHKHPMDSLRLVFPPTATAILCVPFWKLVAFFATPTITPALFGGGLLGYVMYDCTHYYLHHG
QPSKEPAKNLKRYHLNHHFRIQNKGFGITSSLWDYVFGTLPPSKTTGKNN

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term endoplasmic reticulum
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Biological Process
GO Term cell death
4
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants YES