LOC_Os03g56800

Expression Profile

RGAP LOCUS ID LOC_Os03g56800
RAP-DB ID Os03g0780500
Function CBS domain containing membrane protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 9

2) CELLO Prediction
localization Chloroplast
score 3.07

3) NUCPRED Prediction
localization Non Nuclear
score 0.11

4) Y-Loc Prediction
localization Cytoplasm
score 60
confidence value 0.07
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCBSIMPDH1|OsCBSIMPDH1a|OsCBSIMPDH1b
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.096
NLS score -0.47
Protein Sequence >LOC_Os03g56800.1 protein
MAASSADLADDGFPAPRLFSQGVSYTYDDVIFLPGYIGFPADAVDLSTRLSRRIPLSIPCVASPMDTVSEAAMAAAMASLGAAAVVHCNTEPHLQASIVR
AAKSRRLPFVSSVPLFSPASTPSLSDFAGHDYGLVTERGDSLSKLVGVAVAAETSSRQAPLPVSEYMRPAPRSVSASFDFEQAAAFLADEGLDYAPLVSD
DSEVIDLITVNDVERIRSYPKLGKPSLGADGKFVVAASIGTREDDKRRLEQLVKAGANAIVVDSSQGNSIYQIDMIKYAKKMYPEVDLIGGNVVTIAQAQ
NLVASGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASYAKDHNVPVIADGGISNSGHIVKALSLGASTVMMGSFLAGSHEAPGTYEYKDGHRVKKY
RGMGSLEAMTKGSDARYLGDTLKLKVAQGVVGAVADKGSVLRFIPYTMQAVKQGFQDLGASSLQSAHELLRSETIKLEVRTGAAQVEGGIHGLVSYEKKA
F

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Cellular comBiological Processonent
GO Term cytosol
5
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants YES