LOC_Os03g55930

Expression Profile

RGAP LOCUS ID LOC_Os03g55930
RAP-DB ID Os03g0769100
Function ribosomal protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Chloroplast
score 2.603

3) NUCPRED Prediction
localization Non Nuclear
score 0.36

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.95
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) WGL2
Function assigned as per literature WGL2 is essential for early chloroplastdevelopment in ric
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment Rice protoplasts cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 29995230
Reference of localization https://thericejournal.springeropen.com/articles/10.1186/s12284-018-0233-2
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.157
NLS score -0.22
Protein Sequence >LOC_Os03g55930.1 protein
MALSLTTAFSHLSLPSTSKFHPLPLLHLRFPSSSSSRRAARLALAASAAEAAEPVEVEEAPAEDGADEVVAVEDELSGPALRKYVKQRLPGGFAAQRITA
TGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEYCKVPLVTLGFENSYDVFVKVHGGGLSGQAQAICLGVARALVKISTANKVTLRGEGLLTRD
TRIVERKKAGLKKARKRPQFSKR

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Biological Process
GO Term translation
3
GO Category Cellular comBiological Processonent
GO Term ribosome
4
GO Category Cellular comBiological Processonent
GO Term plastid
5
GO Category Molecular Function
GO Term structural molecule activity
6
GO Category Cellular comBiological Processonent
GO Term cytosol
Presence of Splice variants No