LOC_Os03g55610

Expression Profile

RGAP LOCUS ID LOC_Os03g55610
RAP-DB ID Os03g0764900
Function dof zinc finger domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 4.211

3) NUCPRED Prediction
localization Non Nuclear
score 0.45

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.06
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category C2C2-Dof

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SP3|OsDOF15
Function assigned as per literature SP3 regulates panicle architecture by modulating cytokinin homeostasis
Subcellular localization as per literature Nucleus
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 30302902
Reference of localization https://onlinelibrary.wiley.com/doi/abs/10.1111/jipb.12729
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.061
NLS score -0.22
Protein Sequence >LOC_Os03g55610.1 protein
MIQELLGGTTMDQLKGASALNHASLPVVLQPIVSNPSPTSSSSTSSRSSAQATQQRSSSATSSPHGQGQGGGAAEQAPLRCPRCNSSNTKFCYYNNYNLT
QPRHFCKTCRRYWTKGGALRNVPIGGGCRKPRPMPAPVAKPPMSCKAAPPLGLGGGPVSWASGQQAATAHLMALLNSARGVQGHGGSNVHRLLGLDTMGH
LQILPGAPNGAGAGTAASLWPQSAPRPVTPPPPHMDSQLGMGTLGHHDVLSSLGLKLPSSASSSPAASYYSDQLHAVVSNAGRPQAPYDVATASLPCTTA
VTSLPSALSSVSAAAPTSNTVGMDLPPVSLAAPEMQYWNGPAAMSVPWPDLPTPNGAFP

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
5
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No