LOC_Os03g55490

Expression Profile

RGAP LOCUS ID LOC_Os03g55490
RAP-DB ID Os03g0763000
Function casein kinase II subunit alpha-2, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 12

2) CELLO Prediction
localization Mitochondrial
score 2.142

3) NUCPRED Prediction
localization Non Nuclear
score 0.6

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.17
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OspCKII
Function assigned as per literature
Subcellular localization as per literature Chloroplast (N-terminal 184 amino acids were used)
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 25316064
Reference of localization https://academic.oup.com/jxb/article/66/1/175/2893409
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 4
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.145
NLS score 1.15
Protein Sequence >LOC_Os03g55490.1 protein
MAWCAARSRLLPLATAPQLLRRLLLSSAAAPRYAHPHHHHSNSRRRRRPLAPTVYAAAAAAAAEAPLPMPPRIGRATRHPGGAASVARVYADANSQRPKE
YWDYESLDIEWGEQDGYEVLRKLGRGKYSEVFEGFRPGGDERCVIKILKPVKKKKIKREIKILQNLYGGPNIVKLLDVVRDDESKTPSLIFEYVNNTDFK
VLYPTLLDYDIRYYIYELLKALDYCHSRGIMHRDVKPHNIMIDHEKRQLCLIDWGLAEFYHPKMEYNARVASRSYKGPELLVDLLDYDYSLDLWSLGCMF
AAMIFRVDPFFNGQDNYDQLVKITEVLGTEDFYNYLEKYGLELDPQLERLVGRHNRKPWSMFVNSGNRHLASPEAIDFVDRLLRYDHQERPTAKEAMAHP
YFNPVRST

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term kinase activity
4
GO Category Molecular Function
GO Term nucleotide binding
5
GO Category Cellular comBiological Processonent
GO Term cytosol
6
GO Category Biological Process
GO Term protein modification process
Presence of Splice variants YES