LOC_Os03g54790

Expression Profile

RGAP LOCUS ID LOC_Os03g54790
RAP-DB ID Os03g0755100
Function ABC transporter, ATP-binding protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 6.5

2) CELLO Prediction
localization PlasmaMembrane
score 2.752

3) NUCPRED Prediction
localization Non Nuclear
score 0.06

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.65
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsALS1
Function assigned as per literature  OsALS1 is responsible for sequestration of Al into the vacuoles, which is required for internal detoxification of Al in rice
Subcellular localization as per literature Tonoplast
Cells used for localization experiment Rice protoplasts and Arabidopsis protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 22035218
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-313X.2011.04837.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.106
NLS score -0.47
Protein Sequence >LOC_Os03g54790.1 protein
MGKNLRIKTGNRAPLLAQGETSRALSDLEEGSNVQPENVGFCRVIKLARHDAGKLVIATMALLVASLSNILVPKYGGKIIDIVSRDVRRPEDKAQALDDV
TGTILYIVIIVVTGSVCTALRAWLFNSASERVVARLRKDLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNITTTSIGLGFMFATS
WKLTLLALVIVPVISIAVRKFGRFLRELSHQTQAAAAVASSIAEESFGAIRTVRSFAQESHEVLRYGEKVDETLKLGLKQAKVVGMFSGGLNAASTLSVV
IVVIYGANLTINGYMTTGSLTSFILYSLTVGSSVSALSGLYTTVMKASGASRRVFQLLDRVSSMANSGDRCPTNENDGEVELDDVWFAYPSRPSHMILKG
ITLKLTPGSKVALVGPSGGGKTTIANLIERFYDPLKGRILLNGVPLPEISHQFLHRKVSIVSQEPVLFNCSIEENIAYGLEGKASSADVENAAKMANAHN
FICSFPDQYKTVVGERGIRLSGGQKQRVAIARALLMNPRVLLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVKSADTVAVISDGQIVESGT
HDELLSRDGIYTALVKRQLQGPRFEGTSNATAEIEPISNGQ

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Biological Process
GO Term transport
3
GO Category Biological Process
GO Term cellular process
4
GO Category Molecular Function
GO Term hydrolase activity
5
GO Category Molecular Function
GO Term transporter activity
6
GO Category Cellular comBiological Processonent
GO Term vacuole
7
GO Category Cellular comBiological Processonent
GO Term membrane
8
GO Category Biological Process
GO Term catabolic process
9
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
10
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants No