LOC_Os03g54770

Expression Profile

RGAP LOCUS ID LOC_Os03g54770
RAP-DB ID Os03g0754900
Function WD domain, G-beta repeat domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 9

2) CELLO Prediction
localization Extracellular
score 1.76

3) NUCPRED Prediction
localization Non Nuclear
score 0.01

4) Y-Loc Prediction
localization Cytoplasm
score 82
confidence value 0.63
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCstF50|OsWD40-93
Function assigned as per literature
Subcellular localization as per literature Nucleus
Cells used for localization experiment N. benthamiana leaves
NUCLEAR or Not Nuclear NUCLEAR
PMID 19561057
Reference of localization https://academic.oup.com/pcp/article/50/8/1479/1814026
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.104
NLS score -0.47
Protein Sequence >LOC_Os03g54770.1 protein
MDAAVQEAKLLRQVNALIVAHLRDHNLTQAAAAVAAATMTPLAPPEPDGDDSVPANQLLRLVAKGLAVEREETGRGGGAFDSAAAAAGYGGLLPPLGTNA
VDFSTQDVKGSSKSFPKHEARHVSDHKNVVRCAKFSPDGKYFASGSGDTSIKFFEVAKIKQMMLGDSKDGPVRPVIRTFYDHTQPINDLDFHPESPILIS
AAKDNTIRFFDFSKTVARKAFRVIQDTHNVRSVCFHPCGDYLLAGTDHPVAHLYDINTFTCYLSANSHDSNAAINQVRYSSTGSLYVTASKDGSLRIWDG
ISAECVRPIIGAHASAEVTSAIFTKDERYVLSCGKDSCIKLWEVGSGRLVKQYVGAVHRQFRCQAVFNQTEEFVVSTDEQNSEVVVWDALTAENVARLPS
GHTGAPRWLGHSPAEPAFVTCGNDRSVRFWKQTV

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term intracellular
2
GO Category Molecular Function
GO Term nucleotide binding
3
GO Category Cellular comBiological Processonent
GO Term plasma membrane
4
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES