| RGAP LOCUS ID |
LOC_Os03g54091 |
| RAP-DB ID |
Os03g0752200 |
| Function |
OsTOP6A1 - Topoisomerase 6 subunit A homolog 1, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
7 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
1.198 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.54 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
78.51 |
| confidence value |
0.13 |
| Number Of Software Predicting Nucleus |
2 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsSPO11-1|OsTOP6A1 |
| Function assigned as per literature |
OsTOP6A1 confers abiotic stress tolerance in transgenic Arabidopsis plants |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
onion epidermal cells |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
18071708 |
| Reference of localization |
https://link.springer.com/content/pdf/10.1007%2Fs00299-007-0491-8.pdf |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
2 |
| Number of PAT7 |
1 |
| Number of Bipartite |
2 |
| Basic residues % |
0.136 |
| NLS score |
1.74 |
| Protein Sequence |
>LOC_Os03g54091.1 protein
MAGREKRRRVAALDGEERRRRQEEAATLLHRIRGLVRWVVAEVAAGRSPTVALHRYQNYCSSASAAAASPCACSYDVPVGTDVLSLLHRGSHASRLNVLL
RVLLVVQQLLQQNKHCSKRDIYYMYPSIFQEQAVVDRAINDICVLFKCSRHNLNVVPVAKGLVMGWIRFLEGEKEVYCVTNVNAAFSIPVSIEAIKDVVS
VADYILIVEKETVFQRLANDKFCERNRCIVITGRGYPDIPTRRFLRYLVEQLHLPVYCLVDADPYGFDILATYKFGSLQLAYDANFLRVPDIRWLGVFTS
DFEDYRLPDCCLLHLSSEDRRKAEGILSRCYLHREAPQWRLELEAMLQKGVKFEIEALSACSISFLSEEYIPKKIKQGRHI |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
cell cycle |
|
| 3 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
nucleotide binding |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
DNA metabolic process |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
catabolic process |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
hydrolase activity |
|
| 10 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| Presence of Splice variants |
No |
