LOC_Os03g53960

Expression Profile

RGAP LOCUS ID LOC_Os03g53960
RAP-DB ID Os03g0750800
Function transcriptional adaptor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9

2) CELLO Prediction
localization Nuclear
score 4.193

3) NUCPRED Prediction
localization Non Nuclear
score 0.73

4) Y-Loc Prediction
localization Nuclear
score 99.81
confidence value 0.94
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category MYB_related

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHXA701|HXA701
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 5
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.158
NLS score 1.03
Protein Sequence >LOC_Os03g53960.1 protein
MGRSRGVPNSGDDETNHRSKRRRVASSGDAPDSLSAACGGAGEGGGKKALYHCNYCNKDISGKIRIKCSKCPDFDLCVECFSVGAEVTPHRSNHPYRVMD
NLSFPLICPDWNADEEILLLEGIEMYGLGNWAEVAEHVGTKTKAQCIDHYTTAYMNSPCYPLPDMSHVNGKNRKELLAMAKVQGESKKGTSVLPGDLTPK
DESPFSPPRVKVEDALGEGLAGRSPSHIAGGANKKASNVGQFKDGANVAKVEDGHVDRSIGVKKPRYSADEGPSLTELSGYNSKRHEFDPEYDNDAEQAL
AEMEFKETDSETDRELKLRVLRIYLSRLDERKRRKEFILERNLLFPNPLEKDLTNEDKEVYHRYKVFMRFLSKEEHEALVRSVLEERKIRRRIQELQECR
SAGCRTLAEAKIHIEQKRKKEHEVNAQKAKESGQLLSNTKVVHKTNRPMKIESDGNLDQKKGGASLDSTGRDSPKTTGHAGTKHWDDWDIVGFPGAELLS
TSEKNLCCQNRLLPNHYLKMQEVLMQEIFKGSVAKKEDAHVLFKVDPAKVDNVYDMVTKKLGTNEEAPTV

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Biological Process
GO Term response to stress
5
GO Category Biological Process
GO Term response to abiotic stimulus
6
GO Category Molecular Function
GO Term binding
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES