LOC_Os03g53150

Expression Profile

RGAP LOCUS ID LOC_Os03g53150
RAP-DB ID Os03g0742900
Function OsIAA13 - Auxin-responsive Aux/IAA gene family member, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization mito
score 8

2) CELLO Prediction
localization Nuclear
score 2.127

3) NUCPRED Prediction
localization Non Nuclear
score 0.11

4) Y-Loc Prediction
localization Nuclear
score 99.02
confidence value 0.96
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category AUX/IAA

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsIAA13|OsiIAA1
Function assigned as per literature Auxin signal transduction
Subcellular localization as per literature Nucleus
Cells used for localization experiment
NUCLEAR or Not Nuclear NUCLEAR
PMID 16139905
Reference of localization https://www.sciencedirect.com/science/article/pii/S0167478105002058
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.148
NLS score -0.47
Protein Sequence >LOC_Os03g53150.1 protein
MAGADVDVGTELRLGLPGGGGGAAEAAAKAAKRGFEETIDLKLKLPTAGMEEAAAGKAEAPAAEKAKRPAEAAAADAEKPPAPKAQAVGWPPVRSFRRNI
MTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFTATGNNMNEVNGSDAVTTYEDKDGDWMLVGD
VPWQMFVESCKRLRIMKGSEAIGLAPRAKDKYKNKS

GO Analysis
1
GO Category Biological Process
GO Term response to endogenous stimulus
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES