LOC_Os03g52840

Expression Profile

RGAP LOCUS ID LOC_Os03g52840
RAP-DB ID Os03g0738400
Function serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization mito
score 9.5

2) CELLO Prediction
localization Mitochondrial
score 3.09

3) NUCPRED Prediction
localization Non Nuclear
score 0.06

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.89
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSHM1|OsSHMT1
Function assigned as per literature OsSHMT1 has role in photorespiration in rice
Subcellular localization as per literature Mitochondria
Cells used for localization experiment Rice protoplasts and Arabidopsis protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26191072
Reference of localization https://www.frontiersin.org/articles/10.3389/fgene.2015.00226/full
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.119
NLS score -0.47
Protein Sequence >LOC_Os03g52840.1 protein
MAMATALRKLSSDALRRQPLSRITPLYYMASLPATEERSGVTWPKQLNAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSE
GYPGARYYGGNEYIDMAESLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLD
ESTGLIDYDQMEKSAVLFRPKLIVAGASAYARLYDYDRMRKVCDKQKAILLADMAHISGLVAAGVVPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGVKG
VNKQGKEVMYDFEDKINAAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVMSNCAKFAQSLTAKGYELVSGGTDNHLVLVNLKSKGIDGSRVEKV
LENVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVADFFDAAVNLALKVKAAAGGTKLKDFVATLQSDSNIQSEIAKLRHDVEEYAKQFP
TIGFEKETMKYKN

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term mitochondrion
2
GO Category Cellular comBiological Processonent
GO Term membrane
3
GO Category Cellular comBiological Processonent
GO Term extracellular region
4
GO Category Biological Process
GO Term cellular process
5
GO Category Biological Process
GO Term catabolic process
6
GO Category Molecular Function
GO Term protein binding
7
GO Category Biological Process
GO Term metabolic process
8
GO Category Cellular comBiological Processonent
GO Term plasma membrane
9
GO Category Cellular comBiological Processonent
GO Term plastid
10
GO Category Cellular comBiological Processonent
GO Term nucleus
11
GO Category Biological Process
GO Term response to stress
12
GO Category Biological Process
GO Term response to abiotic stimulus
13
GO Category Molecular Function
GO Term transferase activity
14
GO Category Biological Process
GO Term biological_process
15
GO Category Biological Process
GO Term cell death
16
GO Category Molecular Function
GO Term RNA binding
17
GO Category Biological Process
GO Term biosynthetic process
18
GO Category Cellular comBiological Processonent
GO Term ribosome
19
GO Category Cellular comBiological Processonent
GO Term cytosol
Presence of Splice variants YES