LOC_Os03g52700

Expression Profile

RGAP LOCUS ID LOC_Os03g52700
RAP-DB ID Os03g0737200
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 3.206

3) NUCPRED Prediction
localization Non Nuclear
score 0.79

4) Y-Loc Prediction
localization Nuclear
score 88.14
confidence value 0.73
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHOS1
Function assigned as per literature OsHOS1 is involved in root mechanosensing and cold tolerance
Subcellular localization as per literature Nuclear when interact with OsEREBP1 and OsEREBP2 separetely
Cells used for localization experiment Rice protoplast
NUCLEAR or Not Nuclear NUCLEAR
PMID 26381316
Reference of localization http://www.plantphysiol.org/content/169/3/2275.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.121
NLS score -0.47
Protein Sequence >LOC_Os03g52700.1 protein
MEQNALEQLASIDLIELCKEARIEHCRATRDLSSCGRYVQHVLNSCGHASLCAECSQRCDVCPICRSPIPDTGNRVRLRLYYKCLEAGLISKQHDERFQE
KEDHSDPVNLDVQRLHSLFDVALQNNLASLICHYTTDVCLDENAVSSDPLLAFLLDEVVIKEWCKKAKFAVQLAGISSVVEVMITSFSEAVSAHVNDLHQ
LMESTLKAKQHLEAMMWCIRHKFLEDIPSRHTNLASWSSDVIKRKADAKERKWPEFSDKSSAYNEANQGILFIEQALQNLGIQESNSGSEEGVEIVCLQS
EQSSSMFCSTIDQFSVDKYPFKDLREAVDVLFLHGSSDMVIAKQAIFLYYLFDRHWTRPDSEWRYLVDDFAATFGISRRTLLECLVFCLLDDHSSHALEE
ACSLLPKISCKETHPKIAQVLLERHKPDVALVVLKCTGRDTFSSAANIEKDDTESLSEAVTAVRVRIEYGHLTEAFMYHRSYCSKVKEQRSADMSHVEDA
NSYKSSWMYHVEVMMTEFCNICIERNFVDRMIDLPWDSEEGKHLHKSLLDCAREMPMEPCGSLLVVFYLQRYRYLEAYEVDRSLQSFEQNALETASEEKA
SKIRTIAQWRQSLVTKCIEMLPEAEREDMRTIGSAERNQFAVQTMQNSSPANHIVKSPNPVIAFSLSATPIPQKKSSPLQSRNINVLNDSVGLNSSARSE
FGRKVPSILQCRPVPLSSPISNVRSTAGGLFPSMGQNGEGPYLKGTKELSFTKGESGLKKGTRPAGYDSLPMYFNMGSVDTPMKEYRSSLLKTEVNKTTP
FQVKDSVGKGEFDFGSRAEKPFILSGTGAGQNGHSKISDNAGFHEVHIQKTKVPPKENVLSFGKKSSVDEAPPGKGVSRWRSDESSEDEDDKRTSGYMES
GASLATRRRARFSRR

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Biological Process
GO Term response to stress
5
GO Category Biological Process
GO Term response to abiotic stimulus
6
GO Category Biological Process
GO Term protein modification process
7
GO Category Cellular comBiological Processonent
GO Term cytoplasm
8
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants No