LOC_Os03g52690

Expression Profile

RGAP LOCUS ID LOC_Os03g52690
RAP-DB ID Os03g0737000
Function CBS domain containing membrane protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cysk
score 5

2) CELLO Prediction
localization Cytoplasmic
score 1.421

3) NUCPRED Prediction
localization Non Nuclear
score 0.07

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.66
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCBSX4
Function assigned as per literature  OsCBSX4 has role in abiotic stress tolerance in plants
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment onion epidermal peel
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 22302312
Reference of localization https://link.springer.com/article/10.1007%2Fs12033-011-9487-2
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.113
NLS score -0.47
Protein Sequence >LOC_Os03g52690.1 protein
MMVCGSVLHPDFQSSSQAHDFVGVKMQRAIQAIGSHGSLLKSAVLRHISAPKPSILPAVYSRSMSVSSAQIEESGFETATVADILKSKGKSADGSWLWCT
TDDSVYDAVKSMTQHNVGALVVVKPGQDKSIAGIVTERDYLRKIIVQGRSSKSTKVGDIMTEENQLITVKPDTRVLQAMQLMTEKRIRHIPVIDGTGMVG
MVSIGDIVRAVVSEHREELNRLNAYIQGGY

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term response to abiotic stimulus
3
GO Category Cellular comBiological Processonent
GO Term mitochondrion
4
GO Category Molecular Function
GO Term binding
Presence of Splice variants YES