LOC_Os03g51970

Expression Profile

RGAP LOCUS ID LOC_Os03g51970
RAP-DB ID Os03g0729500
Function growth-regulating factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9

2) CELLO Prediction
localization Nuclear
score 4.129

3) NUCPRED Prediction
localization Non Nuclear
score 0.51

4) Y-Loc Prediction
localization Nuclear
score 82.47
confidence value 0.13
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category GRF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGRF6
Function assigned as per literature OsmiR396d regulates the expression of OsGRF genes, which function with OsGIF1 in floret development through targeting of JMJ706 and OsCR4
Subcellular localization as per literature nucleus
Cells used for localization experiment rice leaf protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 24596329
Reference of localization http://www.plantphysiol.org/content/165/1/160
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.086
NLS score -0.13
Protein Sequence >LOC_Os03g51970.1 protein
MQGAMARVRGPFTPSQWIELEHQALIYKYLAANSPVPHSLLIPIRRSLTSPYSPAYFGSSTLGWGSFQLGYSGSADPEPGRCRRTDGKKWRCSRDAVADQ
KYCERHMNRGRHRSRKHVEGQPGHAAKAMPAAVAAAAASATQPSAPAAHSGGAVAGLAINHQHQQMKNYAANTANPCSLQYSRDLANKHNESEQVQDSDS
LSMLTSISTRNTGSLFPFSKQHNPFEVSNSRPDFGLVSPDSLMSSPHSSLENVNLLTSQSLNEQQSSVSLQHFVDWPRTPAQGALAWPDAEDMQAQRSQL
SISAPMASSDLSSASTSPIHEKLMLSPLKLSREYSPIGLGFAANRDEVNQGEANWMPMFRDSLMGGPLGEVLTKNNNMEARNCLSESLNLLNDGWDSSSG
FDSSPVGVLQKTTFGSVSSSTGSSPRLENHSVYDGNSNLRDDLGSVVVNHPSIRLV

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Molecular Function
GO Term protein binding
3
GO Category Biological Process
GO Term multicellular organismal development
Presence of Splice variants No