LOC_Os03g51690

Expression Profile

RGAP LOCUS ID LOC_Os03g51690
RAP-DB ID Os03g0727000
Function Homeobox domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 2.852

3) NUCPRED Prediction
localization Non Nuclear
score 0.69

4) Y-Loc Prediction
localization Nuclear
score 99.24
confidence value 0.69
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category HB/TALE

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OSH1|Oskn1
Function assigned as per literature OSH1 functions in shoot apical meristem maintenance in rice
Subcellular localization as per literature Nucleus and cytoplasmic strands and also in small vesicle-like structures in the cytoplasm
Cells used for localization experiment Onion epidermal peels, Rice suspension cells, Rice epidermal leaf cells and root hairs of stably transformed Arabidopsis seedlings
NUCLEAR or Not Nuclear NUCLEAR
PMID 15604716
Reference of localization https://link.springer.com/article/10.1007/s11103-004-1967-3
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.097
NLS score 0.34
Protein Sequence >LOC_Os03g51690.2 protein
MEEISHHFGVVGASGVHGGHQHQHHHHPWGSSLSAIVAPPPPPQLQQQQTQAGGMAHTPLTLNTAAAAVGNPVLQLANGSLLDACGKAKEASASASYAAD
VEAIKAKIISHPHYSSLLAAYLDCQKVGAPPEVAARLTAVAQDLELRQRTALGVLGAATEPELDQFMEAYHEMLVKYREELTRPLQEAMEFLRRVETQLN
TLSISGRSLRNILSSGSSEEDQEGSGGETELPEIDAHGVDQELKHHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQQLLNWWELHYKWPYPSESQKVAL
AESTGLDLKQINNWFINQRKRHWKPSDEMQFVMMDGYHPTNAAAFYMDGHFINDGGLYRLG

GO Analysis
1
GO Category Biological Process
GO Term multicellular organismal development
2
GO Category Biological Process
GO Term cell differentiation
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Molecular Function
GO Term protein binding
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES