| RGAP LOCUS ID |
LOC_Os03g51550 |
| RAP-DB ID |
Os03g0725400 |
| Function |
WD repeat-containing protein 5, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
7 |
2) CELLO
Prediction
|
| localization |
Chloroplast |
| score |
2.065 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.04 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
87 |
| confidence value |
0.26 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsWDR5a|OsWDR5 |
| Function assigned as per literature |
OsWDR5a binds to Early heading date 1 to regulate its H3K4me3 and expression levels |
| Subcellular localization as per literature |
Nucleus when interacts with OsTrx1 |
| Cells used for localization experiment |
Rice protoplasts and Arabidopsis protoplasts |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
29440594 |
| Reference of localization |
http://www.plantphysiol.org/content/plantphysiol/early/2018/02/12/pp.17.01749.full.pdf |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.105 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os03g51550.2 protein
MAAEDNPGYALRATLAGHRRAVSAVKFSPDGRLLASASADKLLRVWSTSDLASPVAELAGHGEGVSDLAFSPDGRLIASASDDRTVRIWDLGDGGGGGGG
GEPRLMKTLSGHTNYAFCLAFSPHGNMLASGSFDETVRVWEVRSGRCLRVLPAHSEPVTSVDFNRDGAMIVSGSYDGLCRIWDSATGHCIKTLIDDESPP
VSFAKFSPNGKFVLAATLDSKLRLWNFSAGKFLKTYTGHVNTKYCIPAAFSITNGKYIVSGSEDKCVYIWDLQSRKILQKLEGHTDTVIAVSCHPNENMI
ASGGLDGDKTVKVWVQKEEDQMEV |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleoplasm |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
nucleotide binding |
|
| 6 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
intracellular |
|
| 7 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
reproduction |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| Presence of Splice variants |
YES |
