LOC_Os03g51200

Expression Profile

RGAP LOCUS ID LOC_Os03g51200
RAP-DB ID Os03g0721900
Function Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9

2) CELLO Prediction
localization Nuclear
score 4.028

3) NUCPRED Prediction
localization Non Nuclear
score 0.09

4) Y-Loc Prediction
localization Chloroplast
score 6
confidence value 0.01
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category CCAAT

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) H2AX
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.153
NLS score -0.47
Protein Sequence >LOC_Os03g51200.1 protein
MSSSQGGGGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRL
LGTVTIAAGGVLPNIQQVLLPKKGGGKGDIGSASQEF

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Cellular comBiological Processonent
GO Term nucleolus
4
GO Category Biological Process
GO Term cellular component organization
5
GO Category Biological Process
GO Term DNA metabolic process
Presence of Splice variants No