LOC_Os03g50940
| RGAP LOCUS ID | LOC_Os03g50940 | ||||
| RAP-DB ID | Os03g0718600 | ||||
| Function | cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | chlo | ||||
| score | 11 | ||||
2) CELLO Prediction |
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| localization | Chloroplast | ||||
| score | 2.19 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.17 | ||||
4) Y-Loc Prediction |
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| localization | Mitochondrion | ||||
| score | |||||
| confidence value | 0.81 | ||||
| Number Of Software Predicting Nucleus | 0 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | COX11|OsCOX11 | ||||
| Function assigned as per literature | CMS-related cytoplasmic-nuclear incompatibility is driven by a detrimental interaction between COX11 and Wa352 | ||||
| Subcellular localization as per literature | Mitochondria | ||||
| Cells used for localization experiment | Rice protoplasts and Arabidopsis protoplasts | ||||
| NUCLEAR or Not Nuclear | NOT NUCLEAR | ||||
| PMID | 23502780 | ||||
| Reference of localization | https://www.nature.com/articles/ng.2570 | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 0 | ||||
| Number of PAT7 | 0 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.111 | ||||
| NLS score | -0.47 | ||||
| Protein Sequence | >LOC_Os03g50940.1 protein MPPPPPPSLARLHQRLSLSLLRGRSPPAAADAFLRRGLASSASSSSSAAAAAAVAAAAAGREKSSRRTLAYLLGVAAAMVGASYAAVPLYRRFCQATGYG GTVQRRESVEEKISRHARDGTTTSREIIVQFNADVADGMPWKFIPTQREVKVKPGESALAFYTAENRSSAPITGVSTYNVAPMKAAIYFNKIQCFCFEEQ TLLPGEQIDMPVFFYIDPEFETDPKMEGVNNIVLSYTFFKVNDS |
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GO Analysis |
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| 1 |
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| 2 |
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| Presence of Splice variants | YES | ||||