LOC_Os03g50780

Expression Profile

RGAP LOCUS ID LOC_Os03g50780
RAP-DB ID Os03g0716200
Function PHD-finger domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 3

2) CELLO Prediction
localization PlasmaMembrane
score 1.025

3) NUCPRED Prediction
localization Non Nuclear
score 0.29

4) Y-Loc Prediction
localization Chloroplast
score 4
confidence value 0.06
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category PHD

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) TIP3
Function assigned as per literature  TIP3 regulates Ubisch bodies and pollen exine formation
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 31021015
Reference of localization https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6852570/
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.105
NLS score -0.29
Protein Sequence >LOC_Os03g50780.1 protein
MPSMRALERLASWPTPPPPPPPPPPPAKAAAAEAERPCPPSSAATTSSSSSSSASAAPAAAGAPRVYPLRDFPGREAAGLGGAFRDNVRWLLRQWGGASP
ASPAAGGPGSASAAVAVAWRVLLSDDRTGVVVPIFAVEEPVASSPKPLCDYCRWAGWSHHWVSKRKYHFIIPAPADWDRQLAADVILGRTDHLLHGLIHS
NGFGHLVMLRGRDGGSTALSGRDIMDIWDCLCSALRARAVSVVDFSQKRSLDLRLLLSVAHGDTWFTRWGYCLARGCFCVSTSTYAASVEALAALPVDYL
RSRHVRRVVTIYRRLSNKPLVTVREFLRCLLDWKHLEPPLQLPPVKTCTRLQFMLPKPSVMKRHRQQPCQRFEDVIDLLQCRWSKKRLLDAAEVVVDRLL
EHGSGAEMTRQAVRDAARGAIGDTGLLDFVIKSLGDTIVGNYIVRRVPDAETRVLHFSLEEYEEPTPALLDVEVECTPLPPVVRWPSTVEVERDLRAVYR
AMVEVRSEAAQAVLDCKHWVKWWGLGDESDDQLRFFVEWQPQPWEAAELIRPMPLGEIVVVPLHASMGELLVESEHALRDTYYFFEEFQAEGLHGIAGEK
WDPVMLGGAENGDTISVYGNGADMETELRCHGGLDLWEVRCVCGAQDDDGERMIACDACDVWHHTRCVGIADSEPVPPLFLCVLCGGALMAAGPINS

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term cell cycle
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Molecular Function
GO Term binding
7
GO Category Biological Process
GO Term multicellular organismal development
Presence of Splice variants No