LOC_Os03g50560

Expression Profile

RGAP LOCUS ID LOC_Os03g50560
RAP-DB ID Os03g0713600
Function RNA recognition motif containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 7

2) CELLO Prediction
localization Chloroplast
score 1.902

3) NUCPRED Prediction
localization Non Nuclear
score 0.18

4) Y-Loc Prediction
localization Nuclear
score 79.05
confidence value 0.24
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) PIBP1
Function assigned as per literature PIBP1 interacts with the NLR PigmR and functions in NLRmediated blast resistance
Subcellular localization as per literature predominantly nuclear and partial cell periphery
Cells used for localization experiment NILPigm protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 30975460
Reference of localization https://www.sciencedirect.com/science/article/pii/S109727651930187X?via%3Dihub#app2
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.116
NLS score -0.47
Protein Sequence >LOC_Os03g50560.1 protein
MEVRTVKVSNISLNASKREITEFFSFSGDIEYVEMQSESERSQLAYVTFKDSQGADTAVLLSGATIVDRSVIITPVVNYQLPPDARKQSAGEKSSSAESV
VRKAEDVVSSMLAKGFVLSKDALNVARSFDERHNILSNATATVASLDRQYGVSEKISLGRAIVGSKVKEVDDRYQVSELTKSALAAAEQKASIASSAIMN
NQYVSAGASWLTSAFGMVTKAAGDMSSMTKDKVDRAEEERKAIMWEERNGLVSDYAKIHLDEPSSWEPAVLPLESVDEQKLQAV

GO Analysis
1
GO Category Molecular Function
GO Term nucleotide binding
2
GO Category Cellular comBiological Processonent
GO Term cytosol
3
GO Category Biological Process
GO Term metabolic process
4
GO Category Molecular Function
GO Term catalytic activity
5
GO Category Molecular Function
GO Term nucleic acid binding
Presence of Splice variants YES