LOC_Os03g50310

Expression Profile

RGAP LOCUS ID LOC_Os03g50310
RAP-DB ID Os03g0711100
Function CCT/B-box zinc finger protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 10

2) CELLO Prediction
localization Nuclear
score 2.659

3) NUCPRED Prediction
localization Non Nuclear
score 0.78

4) Y-Loc Prediction
localization Nuclear
score 99.99
confidence value 0.95
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category C2C2-CO-like

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCOL10
Function assigned as per literature OsCOL10 functions as a flowering time repressor
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermis cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 26872834
Reference of localization https://academic.oup.com/pcp/article/57/4/798/2461012
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 6
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.143
NLS score 1.65
Protein Sequence >LOC_Os03g50310.1 protein
MASAAAATGAALGARTARACDGCMRRRARWHCPADDAFLCQACDASVHSANPLARRHHRVRLPSASSSPASSPRSAAAPRAGSDDPDAPAWLHGLKRRPR
TPRTKPGGGGKHDASAATVAAAAASAVPDLEAEESGIVGDTDHDVGEEDDEDLLYRVPVFDPMLAELYNPVAADDEEQQIEQKPAARVVPFSEPSPEFAS
GSVEADGLSGFDVPDMELASFAADMESLLMGVDEGFDDLGFLDDEKPHVKLDLDMDMDFASISPAPAPEREERKRKRPEMILKLDYEGVIDSWARDGASP
WFHGERPRFDPSESWPDFPAGSRGGLGAAVTAVTGGEREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRAAALPPLPLPRHQHPPPPPP
RALPPVPMMLAPRGAHGRYRF

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term binding
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No