| RGAP LOCUS ID |
LOC_Os03g49990 |
| RAP-DB ID |
Os03g0707600 |
| Function |
GRAS family transcription factor domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
7 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
1.239 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.07 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
91.95 |
| confidence value |
0.92 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
GRAS |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
SLR1|OsGAI |
| Function assigned as per literature |
SLR1 acts in the nucleus to repress GA action and GA signal causes the level of SLR1 protein in nuclei to decrease |
| Subcellular localization as per literature |
Nucleus; Application of GA3 resulted in disappearance of nuclear SLR1 |
| Cells used for localization experiment |
Rice leaf cells of transgenic plants |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
11826299 |
| Reference of localization |
http://www.plantcell.org/content/14/1/57/tab-figures-data |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
1 |
| Basic residues % |
0.074 |
| NLS score |
0.02 |
| Protein Sequence |
>LOC_Os03g49990.1 protein
MKREYQEAGGSSGGGSSADMGSCKDKVMAGAAGEEEDVDELLAALGYKVRSSDMADVAQKLEQLEMAMGMGGVSAPGAADDGFVSHLATDTVHYNPSDLS
SWVESMLSELNAPLPPIPPAPPAARHASTSSTVTGGGGSGFFELPAAADSSSSTYALRPISLPVVATADPSAADSARDTKRMRTGGGSTSSSSSSSSSLG
GGASRGSVVEAAPPATQGAAAANAPAVPVVVVDTQEAGIRLVHALLACAEAVQQENFAAAEALVKQIPTLAASQGGAMRKVAAYFGEALARRVYRFRPAD
STLLDAAFADLLHAHFYESCPYLKFAHFTANQAILEAFAGCHRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQF
AHTIRVDFQYRGLVAATLADLEPFMLQPEGEADANEEPEVIAVNSVFELHRLLAQPGALEKVLGTVHAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYS
TMFDSLEGGSSGQAELSPPAAGGGGGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGRAGFEPVHLGSNAYKQASTLLALFAGGDGYRVEE
KEGCLTLGWHTRPLIATSAWRVAAA |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 10 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| 11 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 12 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 13 |
| GO Category |
Biological Process |
| GO Term |
reproduction |
|
| 14 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 15 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| Presence of Splice variants |
No |
