LOC_Os03g49900

Expression Profile

RGAP LOCUS ID LOC_Os03g49900
RAP-DB ID Os03g0706900
Function zinc finger, C3HC4 type domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 8

2) CELLO Prediction
localization PlasmaMembrane
score 4.796

3) NUCPRED Prediction
localization Non Nuclear
score 0.13

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.22
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRHC1|LE
Function assigned as per literature OsRHC1 is dependent on the ubiquitin-mediated protein degradation via the 26S proteasome and the presence of the key defence response regulator NPR1
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment rice callus and onion epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 18182423
Reference of localization https://academic.oup.com/jxb/article/58/15-16/4147/449683
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.106
NLS score -0.47
Protein Sequence >LOC_Os03g49900.1 protein
MQRRRAQTWAGVGKTAQAAAAHAALFCFTLLLALKVDGRTAYSWWIIFIPLWLFHGIVARGRFSMPAPSLPHGRHWAPCHSIVAAPLLIAFELLLCIYLE
SLRVKSKPTVDLKIVFLPLLAFEVIILADNFRMCRALMPGDEESMSDEAIWETLPHFWVAISMVFLIAATTFTLLKLSGDVGALGWWDLFINYGIAECFA
FLVCTRWFNPMIHKSPNPGEASSSSAAIRYRDWESGLLLPSLEDHEQERLCGLPDIGGHVMKIPLVIFQVLLCMRLEGTPPSAQYIPIFALFSPLFILQG
AGVLFSLARLLEKVVLLLRNGPVSPNYLTISSKVRDCFAFLHRGSRLLGWWSIDEGSKEEQARLFYTESTGYNTFCGYPPEVVRKMPKRDLAEEVWRLQA
ALGEQSEITKCTKQEFERLQNEKVLCRICYEGEICMVLLPCRHRTLCKTCSDKCKKCPICRVPIEERMPVYDV

GO Analysis
1
GO Category Molecular Function
GO Term binding
2
GO Category Biological Process
GO Term biological_process
3
GO Category Cellular comBiological Processonent
GO Term vacuole
Presence of Splice variants No