| RGAP LOCUS ID |
LOC_Os03g48970 |
| RAP-DB ID |
Os03g0696300 |
| Function |
nuclear transcription factor Y subunit, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
14 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
4.034 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.61 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
99.33 |
| confidence value |
0.5 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
CCAAT/NF_YA |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsNF-YA4 |
| Function assigned as per literature |
OsNF-YA4 may play a role in reproductive development |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Rice protoplast |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
26706071 |
| Reference of localization |
https://www.sciencedirect.com/science/article/pii/S016894521530090X?via%3Dihub |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
1 |
| Basic residues % |
0.12 |
| NLS score |
0.02 |
| Protein Sequence |
>LOC_Os03g48970.1 protein
MESRPGGTNLVEPRGQGALPSGIPIQQPWWTTSAGVGAVSPAVVAPGSGAGISLSGRDGGGDDAAEESSDDSRRSGETKDGSTDQEKHHATSQMTALASD
YLTPFSQLELNQPIASAAYQYPDSYYMGMVGPYGPQAMSAQTHFQLPGLTHSRMPLPLEISEEPVYVNAKQYHGILRRRQSRAKAELEKKVVKSRKPYLH
ESRHQHAMRRARGTGGRFLNTKKNEDGAPSEKAEPNKGEQNSGYRRIPPDLQLLQKET |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleoplasm |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
reproduction |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
embryo development |
|
| Presence of Splice variants |
YES |
