LOC_Os03g48180

Expression Profile

RGAP LOCUS ID LOC_Os03g48180
RAP-DB ID Os03g0687000
Function peptide transporter PTR2, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 14

2) CELLO Prediction
localization PlasmaMembrane
score 4.762

3) NUCPRED Prediction
localization Non Nuclear
score 0.23

4) Y-Loc Prediction
localization Cytoplasm
score 95
confidence value 0.78
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNPF2.4
Function assigned as per literature OsNPF2.4 plays an important role in maintaining nitrate mediated growth and development in rice
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 25332358
Reference of localization https://academic.oup.com/jxb/article/66/1/317/2893438
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.082
NLS score 0.15
Protein Sequence >LOC_Os03g48180.1 protein
MRGGGGGGGGGGEEAGQKLKSMDVDKLENGGDKPALKYHGWRAMPFIIGNETFEKLGTLGTSANLLVYLTQVFHMRSVDAATLLNGLNGTTSLAPIIGAF
LSDAYLGRYLALAIASVASLIGMFLLTMTAAADGLHPAECGVGETCSKATSGQFAVLFMSFAFLVLGSAGIRPCSMPFGADQFDPHTESGKRGINSFFNW
YYFTFTSAMLVSATVIIYVQSNVSWPIGLGIPTALMLLACVLFFMGTRLYVRVTPEGSPFTSIVQVFAAAARKRSLKQPKDPKQDLFDPPHTSAIVTKLA
HTDQFRCLDKAAIVSGPDDVRAGGAAPSNPWRLCSVQQVEEVKCLIRIVPVWSTGIIYYVAVVQQSTYVVLSALQSDRHLGRSFQIPAASFTVFAMLAQT
LWIPIYDRLLVPRLRRVTGKDEGLTLLQRQGIGIALSTVAMVMSAVVEDRRRHIALTQPTLGTTITGGAISAMSSLWMVPQLMVLGLSEAFNLISQIEFY
YKEIPEHMRSVAGALAFCNLALGNYLSGFLVTIVHRTTGAGSNWLAQDLNKGRLDLFYWMIAGIGIFNIIYFMICAKWYRFKGAAAN

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Biological Process
GO Term transport
3
GO Category Cellular comBiological Processonent
GO Term cellular_component
4
GO Category Biological Process
GO Term response to abiotic stimulus
5
GO Category Cellular comBiological Processonent
GO Term plasma membrane
6
GO Category Molecular Function
GO Term transporter activity
Presence of Splice variants YES