LOC_Os03g48170
| RGAP LOCUS ID | LOC_Os03g48170 |
| RAP-DB ID | Os03g0686900 |
| Function | 5-AMP-activated protein kinase-related, putative, expressed |
Sub-cellular Localization Predictions |
|
1) WoLF-PSORT Prediction |
|
| localization | chlo |
| score | 14 |
2) CELLO Prediction |
|
| localization | Nuclear |
| score | 1.616 |
3) NUCPRED Prediction |
|
| localization | Non Nuclear |
| score | 0.62 |
4) Y-Loc Prediction |
|
| localization | Nuclear |
| score | 61.97 |
| confidence value | 0.02 |
| Number Of Software Predicting Nucleus | 2 |
| Seed Specific | No |
| Transcription factor category | |
Experimental evidence for subcellular localization |
|
| Published gene name (updated 1 January 2020) | FLO6 |
| Function assigned as per literature | FLO6 is involved in compound granule formation and starch synthesis in rice endosperm |
| Subcellular localization as per literature | Chloroplast |
| Cells used for localization experiment | Rice protoplasts |
| NUCLEAR or Not Nuclear | NOT NUCLEAR |
| PMID | 24456533 |
| Reference of localization | https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.12444 |
| Is Subcellular localization evidence by author available ? | No |
Sequence Analysis |
|
| Number of PAT4 | 3 |
| Number of PAT7 | 1 |
| Number of Bipartite | 0 |
| Basic residues % | 0.125 |
| NLS score | 0.71 |
| Protein Sequence | >LOC_Os03g48170.1 protein MLPLLLPLPVTPPPPLPSPTLTLAPASAPRRRLVLLAAAAPHHHHHHRRRRVYRRQRAAPTQTRAPRRTLSASNAARGEEDLEEAIYEFMRRSDKPGAFP TRAELVAAGRADLAAAVDACGGWLSLGWSSGGAEAGRASSSVGVHPDYPPEAGAAAAAGGASDLAQGAVWASSREAEASPSGRQPETEEEETETKFGTGL DGMLTRLQRERERVRPPLPRSSDGAGGERDNVALMGQSGAPSHSATGGRYTPKVPDNGNIHSYHPQNGALEHNKSSKSLTNDAWRTWSLDKGGFSDFQAA EIHSTNSRKSFRHDGLDILAQDDVHGPSNGVAVHDYDINDVDSERDDIHARLQNLELDLTAALHTLRSRFDKVISDMSEGDGAKAPNGLSDDWEFEETKV MQAQEELRSIRAKIAVLEGKMALEIIEKNKIIEEKQRRLDEAEKALSELRTVYIVWSNPASEVLLTGSFDGWTSQRRMERSERGTFSLNLRLYPGRYEIK FIVDGVWRNDPLRPLVSNNGHENNLLTVT |
GO Analysis |
|
| Presence of Splice variants | No |