LOC_Os03g48040

Expression Profile

RGAP LOCUS ID LOC_Os03g48040
RAP-DB ID Os03g0685000
Function 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 12

2) CELLO Prediction
localization Mitochondrial
score 1.469

3) NUCPRED Prediction
localization Non Nuclear
score 0.14

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.93
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsFdC2
Function assigned as per literature OsFdC2 plays an important role in photosynthetic rate and development of heading date by regulating electron transfer and chlorophyll content in rice
Subcellular localization as per literature Chloroplast
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26598971
Reference of localization https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0143361
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.109
NLS score -0.47
Protein Sequence >LOC_Os03g48040.1 protein
MAPCPAATTTRIGAPPFAATTARRPARGATTTTKARASGLRQVEGPVSERAYSSSSPAPTHKVTVHDRQRGVVHEFVVPQDQYILHTAEAQDITLPFACR
HGCCTSCAVRIKSGQIRQPEALGISAELKDKGYALLCVGFPTSDVEVETQDEDEVYWLQFGRYFARGPVERDDYALELAMGDE

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term generation of precursor metabolites and energy
3
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES