LOC_Os03g47800

Expression Profile

RGAP LOCUS ID LOC_Os03g47800
RAP-DB ID Os03g0681900
Function RNA recognition motif containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 10

2) CELLO Prediction
localization Nuclear
score 3.269

3) NUCPRED Prediction
localization Non Nuclear
score 0.25

4) Y-Loc Prediction
localization Nuclear
score 43.61
confidence value 0.09
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRZ3
Function assigned as per literature OsRZ3 may play a role in cold adaptation process during cold stress conditions
Subcellular localization as per literature Nucleus
Cells used for localization experiment Roots of OsRZ3-expressing Arabidopsis plants
NUCLEAR or Not Nuclear NUCLEAR
PMID 20088860
Reference of localization https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-3040.2009.02101.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.182
NLS score -0.47
Protein Sequence >LOC_Os03g47800.1 protein
MAGKEEGRIFVGGLSFHTDERKLADAFRRFGKVVDAQIMLERHTQRHRGFGFVTFSDPEAVDSAIKEMHCQELDGRTISVNKAEPKMNTDDTRYESGGGR
GEYRGGRGDGPPPGNCFECGRAGHWARDCPNPGGGRSARYSSSKFSAGGRGDRFSGSDRFGDRYMDDRYDGGYREPVDVRDRYGGGRDRYANDRYPSGGD
RYVPDRYGGPDRYQPSSYGRERERSYERDGVRGNGGYDRSGPRGGGSYDRDGPRGGISGGYDRDGPRGGGVDRYGGGGPARYDGGSYRDRSGPYDRPSRG
GRFDDRFQ

GO Analysis
1
GO Category Molecular Function
GO Term RNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term response to stress
4
GO Category Biological Process
GO Term response to abiotic stimulus
5
GO Category Molecular Function
GO Term nucleic acid binding
Presence of Splice variants No