LOC_Os03g47740

Expression Profile

RGAP LOCUS ID LOC_Os03g47740
RAP-DB ID Os03g0680800
Function homeodomain protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 3.823

3) NUCPRED Prediction
localization Non Nuclear
score 0.58

4) Y-Loc Prediction
localization Nuclear
score 98.96
confidence value 0.21
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category HB/TALE

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsBIHD1
Function assigned as per literature OsBIHD1 is a BELL type of homeodomain transcription factor, whose induction is associated with disease resistance response in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 16163610
Reference of localization https://www.thieme-connect.com/DOI/DOI?10.1055/s-2005-865851
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.095
NLS score -0.47
Protein Sequence >LOC_Os03g47740.1 protein
MATYYSSPGNERDSQAMYPADSGNSSYPVPSAIGNMLYPGNGSSGPYTEFSGIIQHQQNFMELPGHPTAISQDSSSREPNMVASYMDQRSFGPAKDMRNE
MLMHLMDGAHNAGADLIHNDTHSSAQIEFGLLNNHNSMSVAPAPGQGLSLSLNTHILAPSYPYWSAKTELLTPHSYHGDDNRMKNMQSEASQAIRNSKYL
KAAQELLDEVVSVWKSIKQKAQKDQAEAGKSDNKEAEGGSKGEGVSSNPQESTANAAPEISAAEKQELQNKMAKLMAMLDEVDRKYKHYYHQMQIVVSSF
DMVAGSGAAKPYTAVALQTISKHFRCLKDAINDQINVIRKKLGEEESSSGKEGKLTRLRYIDQQLRQQRAFQQYGLLQQNAWRPQRGLPENSVSILRAWL
FEHFLHPYPKDSEKLMLARQTGLTRSQISNWFINARVRLWKPMIEDMYKEEIGEADLDSNSSSDNVPRSKDKIATSEDKEDLKSSMSQTYQPSQLGESKA
NIGMMSLGGAPAGFHNEGNQDDSFMNLMLKDQRPGEAEGSLLHDAVAHHSDENARFMAYHLSGLGRYGNSNVSLTLGLQHPDNRLSVQNTHQPGFAGAGE
EIYNSTASLGVAAASSSDYESTNQIDQRQRSSCRIEAAVWLPQAQGLGSCIFFVRVNAPCCCHVGPGTMASLWVR

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES