LOC_Os03g47280

Expression Profile

RGAP LOCUS ID LOC_Os03g47280
RAP-DB ID Os03g0676400
Function VQ domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization mito
score 9

2) CELLO Prediction
localization Nuclear
score 2.395

3) NUCPRED Prediction
localization Non Nuclear
score 0.05

4) Y-Loc Prediction
localization Cytoplasm
score 35
confidence value 0.04
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsVQ13
Function assigned as per literature OsVQ13 positively regulates JA signaling by activating the OsMPK6-OsWRKY45 signaling pathway in rice
Subcellular localization as per literature cytoplasm and nucleus 
Cells used for localization experiment root tissue of transgenic lines
NUCLEAR or Not Nuclear NUCLEAR
PMID 31207967
Reference of localization https://www.mdpi.com/1422-0067/20/12/2917
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.077
NLS score -0.47
Protein Sequence >LOC_Os03g47280.1 protein
MDHGGGERRSAGAYEAALRAVQRPAAKPWRGGGGGGGAGGSAGAAGAAPPKVYRVAPRDFRELVQRLTGAGTAAPAVAMGASQAVPAPPPPYAGVPAHGQ
SDAAAAADMFDYASWFSVPLLSPASMPAAGYDGQLHHGHGALL

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term biological_process
3
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No