LOC_Os03g46650

Expression Profile

RGAP LOCUS ID LOC_Os03g46650
RAP-DB ID Os03g0669200
Function WD domain, G-beta repeat domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 7

2) CELLO Prediction
localization Extracellular
score 3.413

3) NUCPRED Prediction
localization Non Nuclear
score 0.31

4) Y-Loc Prediction
localization Cytoplasm
score 95
confidence value 0.64
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) RGB1|OsRGB1
Function assigned as per literature RGB1 have roles in the regulation of abiotic stresses
Subcellular localization as per literature plasma membrane, cytosol and nucleus
Cells used for localization experiment Onion epidermal cell
NUCLEAR or Not Nuclear NUCLEAR
PMID 24739238
Reference of localization https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4091194/
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.097
NLS score -0.47
Protein Sequence >LOC_Os03g46650.1 protein
MASVAELKEKHAAATASVNSLRERLRQRRQMLLDTDVERYSRTQGRTPVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK
THAIKLHCPWVMTCAFAPNGQSVACGGLDSACSIFNLNSQADRDGNIPVSRILTGHKGYVSSCQYVPDQETRLITSSGDQTCVLWDVTTGQRISIFGGEF
PSGHTADVLSLSINSSNSNMFVSGSCDATVRLWDIRIASRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDVRTGHQLQVYSREPDRNDNELPT
VTSIAFSISGRLLFAGYSNGDCYVWDTLLAEVVLNLGNLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRKIV

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term intracellular
2
GO Category Biological Process
GO Term response to stress
3
GO Category Biological Process
GO Term response to biotic stimulus
4
GO Category Cellular comBiological Processonent
GO Term endoplasmic reticulum
5
GO Category Biological Process
GO Term reproduction
6
GO Category Biological Process
GO Term response to endogenous stimulus
7
GO Category Molecular Function
GO Term protein binding
8
GO Category Molecular Function
GO Term nucleotide binding
9
GO Category Biological Process
GO Term signal transduction
10
GO Category Cellular comBiological Processonent
GO Term plasma membrane
11
GO Category Biological Process
GO Term catabolic process
12
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
13
GO Category Biological Process
GO Term post-embryonic development
14
GO Category Biological Process
GO Term metabolic process
15
GO Category Biological Process
GO Term cellular process
16
GO Category Biological Process
GO Term multicellular organismal development
17
GO Category Molecular Function
GO Term hydrolase activity
18
GO Category Biological Process
GO Term anatomical structure morphogenesis
Presence of Splice variants No