LOC_Os03g46610
| RGAP LOCUS ID | LOC_Os03g46610 |
| RAP-DB ID | Os03g0669000 |
| Function | DEAD-box ATP-dependent RNA helicase, putative, expressed |
Sub-cellular Localization Predictions |
|
1) WoLF-PSORT Prediction |
|
| localization | chlo |
| score | 5 |
2) CELLO Prediction |
|
| localization | Nuclear |
| score | 1.45 |
3) NUCPRED Prediction |
|
| localization | Non Nuclear |
| score | 0.56 |
4) Y-Loc Prediction |
|
| localization | Nuclear |
| score | 99.13 |
| confidence value | 0.93 |
| Number Of Software Predicting Nucleus | 2 |
| Seed Specific | No |
| Transcription factor category | |
Experimental evidence for subcellular localization |
|
| Published gene name (updated 1 January 2020) | DDX47|TOGR1 |
| Function assigned as per literature | TOGR1 maintains a normal rRNA homeostasis at high temperature |
| Subcellular localization as per literature | Nucleus - Nucleolus |
| Cells used for localization experiment | Rice protoplast |
| NUCLEAR or Not Nuclear | NUCLEAR |
| PMID | 26848586 |
| Reference of localization | http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1005844 |
| Is Subcellular localization evidence by author available ? | No |
Sequence Analysis |
|
| Number of PAT4 | 4 |
| Number of PAT7 | 2 |
| Number of Bipartite | 1 |
| Basic residues % | 0.148 |
| NLS score | 1.84 |
| Protein Sequence | >LOC_Os03g46610.1 protein MAKKKDVEVEELDEEVVAAAAAPAADGGEEQEAEPPARRPSTFAELGVVPELVAACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFALPII QALLKQDKPQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVSLAKRPHIVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLN VEFQKALDDILNVIPKERRTFLFSATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLVHVLNELPGSMIMIFVRTCESTRLLAL TLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQYEAMWFKMIEKL LGYEIPDRKVDNAEIMILRERISDSKRIALTTMKEGGGHKKKRRKNEDDEEEEERNAPVSRKSKSFNKSRRR |
GO Analysis |
|
| Presence of Splice variants | YES |