LOC_Os03g45410

Expression Profile

RGAP LOCUS ID LOC_Os03g45410
RAP-DB ID Os03g0657000
Function TATA-binding protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 10

2) CELLO Prediction
localization Nuclear
score 2.744

3) NUCPRED Prediction
localization Non Nuclear
score 0.04

4) Y-Loc Prediction
localization Nuclear
score 93.58
confidence value 0.46
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsTBP2
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.136
NLS score -0.47
Protein Sequence >LOC_Os03g45410.1 protein
MAAEAAAALEGSEPVDLAKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKTQHEVLGDFVTICNIRFAAVIMRIREPKTTALIFASGKMVCT
GAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETY
TAFENIYPVLTEFRKVQQCVLYKYRNNT

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Molecular Function
GO Term protein binding
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Biological Process
GO Term biosynthetic process
Presence of Splice variants No