LOC_Os03g45400

Expression Profile

RGAP LOCUS ID LOC_Os03g45400
RAP-DB ID Os03g0656900
Function antitermination NusB domain-containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Chloroplast
score 3.184

3) NUCPRED Prediction
localization Non Nuclear
score 0.1

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.76
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNUS1|V1
Function assigned as per literature NUS1 is involved in the regulation of chloroplast RNA metabolism and promotes the establishment of the plastid genetic system during early chloroplast development under cold stress conditions
Subcellular localization as per literature Chloroplast
Cells used for localization experiment Guard cells and protoplasts isolated from mature leaves of transgenic Arabidopsis plants
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 21981410
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1365-313X.2011.04755.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.118
NLS score -0.47
Protein Sequence >LOC_Os03g45400.1 protein
MEATGAAVSAFSTASSSSPAAPRHGRLLASPAAWRSARTLPPRAVASSRATVLVSNPPPPPLPPTPAPAAVAPSKVDRSGRFCSPRAARELALMISYAAC
LEGADVVRLFDRRISARREPGYVFDKACVVNYNHMSFGGGPLEVGTEEEAEKLMSQNEKDSANEAEVLSAPPKLVYNNFVLRLAREILVAVASGWDKHVD
IINKITPQNWKDEPVARILELCILHIAMAEMTSKGTPHKIVINEAVDLAKRFCDGGAPRVINGCLRTFVKDHMNIDTSQPAPAESKA

GO Analysis
1
GO Category Molecular Function
GO Term RNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No