LOC_Os03g44760

Expression Profile

RGAP LOCUS ID LOC_Os03g44760
RAP-DB ID Os03g0650400
Function SWI1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 3.674

3) NUCPRED Prediction
localization Nuclear
score 0.94

4) Y-Loc Prediction
localization Nuclear
score 98.14
confidence value 0.61
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsAM1
Function assigned as per literature OsAM1 plays a fundamental role in building the proper chromosome structure at the beginning of meiosis.
Subcellular localization as per literature Nucleus
Cells used for localization experiment meiocytes
NUCLEAR or Not Nuclear NUCLEAR
PMID 21221128
Reference of localization https://www.nature.com/articles/cr20117
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 1
Number of Bipartite 8
Basic residues % 0.153
NLS score 4.88
Protein Sequence >LOC_Os03g44760.1 protein
MDAEMAAPALAAAHLLDSPMRPQVSRYYSKKRGSSHSRNGKDDANHDESKNQSPGLPLSRQSLSSSATHTYHTGGFYEIDHEKLPPKSPIHLKSIRVVKV
SGYTSLDVTVSFPSLLALRSFFSSSPRSCTGPELDERFVMSSNHAARILRRRVAEEELAGDVMHQDSFWLVKPCLYDFSASSPHDVLTPSPPPATAQAKA
PAASSCLLDTLKCDGAGWGVRRRVRYIGRHHDASKEASAASLDGYNTEVSVQEEQQQRLRLRLRLRQRREQEDNKSTSNGKRKREEAESSMDKSRAARKK
KAKTYKSPKKVEKRRVVEAKDGDPRRGKDRWSAERYAAAERSLLDIMRSHGACFGAPVMRQALREEARKHIGDTGLLDHLLKHMAGRVPEGSADRFRRRH
NADGAMEYWLEPAELAEVRRLAGVSDPYWVPPPGWKPGDDVSAVAGDLLVKKKVEELAEEVDGVKRHIEQLSSNLVQLEKETKSEAERSYSSRKEKYQKL
MKANEKLEKQVLSMKDMYEHLVQKKGKLKKEVLSLKDKYKLVLEKNDKLEEQMASLSSSFLSLKEQLLLPRNGDNLNMERERVEVTLGKQEGLVPGEPLY
VDGGDRISQQADATVVQVGEKRTARKSSFRICKPQGTFMWPHMASGTSMAISGGGSSSCPVASGPEQLPRSSSCPSIGPGGLPPSSRAPAEVVVASPLDE
HVAFRGGFNTPPSASSTNAAAAAKLPPLPSPTSPLQTRALFAAGFTVPALHNFSGLTLRHVDSSSPSSAPCGAREKMVTLFDGDCRGISVVGTELALATP
SYC

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Biological Process
GO Term DNA metabolic process
4
GO Category Biological Process
GO Term cell cycle
5
GO Category Biological Process
GO Term cellular component organization
6
GO Category Molecular Function
GO Term hydrolase activity
Presence of Splice variants YES