LOC_Os03g43990
| RGAP LOCUS ID | LOC_Os03g43990 |
| RAP-DB ID | Os03g0641300 |
| Function | BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed |
Sub-cellular Localization Predictions |
|
1) WoLF-PSORT Prediction |
|
| localization | Nuclear |
| score | 5.5 |
2) CELLO Prediction |
|
| localization | Nuclear |
| score | 1.662 |
3) NUCPRED Prediction |
|
| localization | Non Nuclear |
| score | 0.45 |
4) Y-Loc Prediction |
|
| localization | Nuclear |
| score | 71.51 |
| confidence value | 0.16 |
| Number Of Software Predicting Nucleus | 3 |
| Seed Specific | No |
| Transcription factor category | |
Experimental evidence for subcellular localization |
|
| Published gene name (updated 1 January 2020) | GRP162 |
| Function assigned as per literature | GRP162 plays a critical role in the CMS/Rf (Cytoplasmic Male Sterility and Fertility Restoration)system. |
| Subcellular localization as per literature | Appears to be a cytosolic protein that localizes to mitochondria in association with RF5 |
| Cells used for localization experiment | Onion epidermal cells |
| NUCLEAR or Not Nuclear | NOT NUCLEAR |
| PMID | 22247252 |
| Reference of localization | http://www.plantcell.org/content/24/1/109.long |
| Is Subcellular localization evidence by author available ? | No |
Sequence Analysis |
|
| Number of PAT4 | 0 |
| Number of PAT7 | 0 |
| Number of Bipartite | 0 |
| Basic residues % | 0.115 |
| NLS score | -0.47 |
| Protein Sequence | >LOC_Os03g43990.1 protein MASSVKLGSKPDAFRRQGQAWFCTTGLPSDVTVEVGDMSFHLHKFPLLSKSAFLERLIEETSDQDECVIILNDIPGGAKSFELVARFCYGVKIELSSENV VYLRCASEHLQMTEEIAEDNLISQSEIFLNQVIIRNWKDSLKALETCEDLLPHAENLQIVKRCIESLASKATTDPNLFGWPIREHGIMQSPGGSVLWNGI STGARPRNFSSNWWYEDASALSFHMYKRLISTMESRGIRPEIIAGSLTYYAKKYLPGLNRRHSMGAVPLTATLSEVEQKNLLEEIDRLLPVQKGLASTRV LLGLLRTAMILKASPTCISNLEKRIGMQLDHATLEDLLLPNFSYTMETLYNVECVQRILDHFLAMDQANGAASPCLDDVMASPSLAPITTVAKLIDGYLA EIAPDINLKLPKFQALASAVPEYARPLDDGLYRAIDIYLKAHSWLSEAEREQLCRLMDCQKLSLEACTHAAQNERLPLRVVVQVLFFEQLQLRTSIAGCL LVSDNLEGSRPLRSSITTSGEAGGWATAVRENQVLKVGMDNMRMRLSELEKECSTMRQEIQKLGRGKSGGWASRVPKKFNLKLKSQMCSAQEGSVSEQHK SMSAKLDKLQAKVSRQKKQLAGDA |
GO Analysis |
|
| Presence of Splice variants | YES |