LOC_Os03g43930

Expression Profile

RGAP LOCUS ID LOC_Os03g43930
RAP-DB ID Os03g0640800
Function START domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Nuclear
score 1.103

3) NUCPRED Prediction
localization Non Nuclear
score 0.43

4) Y-Loc Prediction
localization Nuclear
score 68.47
confidence value 0.11
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category HB/HD-ZIP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OSHB4|OsHox32
Function assigned as per literature OsHox32 is involved in phytohormones regulatory pathways
Subcellular localization as per literature Cytoplasm
Cells used for localization experiment tobacco leaves (Nicotiana tabacum) 
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27624698
Reference of localization https://thericejournal.springeropen.com/articles/10.1186/s12284-016-0118-1
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.094
NLS score -0.47
Protein Sequence >LOC_Os03g43930.1 protein
MAAAMVAAVHGVGRQDRSSPGGGGAPQVDTGKYVRYTPEQVEALERVYGECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTV
NRKLTAMNKLLMEENDRLQKQVSRLVYENGYMRQQLHNPSVATTDTSCESVVTSGQHHQQQNPAATRPQRDANNPAGLLAIAEETLAEFLSKATGTAVDW
VQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCVDVLHVIPTGNGGTIELIYMQTYAPTTLAAPRDFWILRYTSGLE
DGSLVICERSLTQSTGGPSGPNTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRPLYESPKILAQKMTIAALRHIRQIAHESSGEMPY
GGGRQPAVLRTFSQRLSRGFNDAVNGFPDDGWSLMSSDGAEDVTIAFNSSPNKLVGSHVNSSQLFSAIGGGILCAKASMLLQNVPPALLVRFLREHRSEW
ADPGVDAYSAAALRASPYAVPGLRAGGFMGSQVILPLAHTLEHEEFLEVIRLEGHSLCHDEVVLSRDMYLLQLCSGVDENAAGACAQLVFAPIDESFADD
APLLPSGFRVIPLDGKTDAPSATRTLDLASTLEVGSGGTTRASSDTSSTCNTRSVLTIAFQFSYENHLRESVAAMARQYVRTVVASVQRVAMAIAPSRLG
GQIETKNPPGSPEAHTLARWIGRSYRFHTGADLLRTDSQSTDSSLKAMWQHSDSIMCCSLKVSVAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDG
RKALCTEFPKIMQQGFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term multicellular organismal development
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Biological Process
GO Term anatomical structure morphogenesis
7
GO Category Biological Process
GO Term reproduction
8
GO Category Biological Process
GO Term post-embryonic development
9
GO Category Biological Process
GO Term embryo development
10
GO Category Biological Process
GO Term flower development
11
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES