LOC_Os03g43890

Expression Profile

RGAP LOCUS ID LOC_Os03g43890
RAP-DB ID Os03g0640100
Function WD domain, G-beta repeat domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 6

2) CELLO Prediction
localization Cytoplasmic
score 2.364

3) NUCPRED Prediction
localization Non Nuclear
score 0.02

4) Y-Loc Prediction
localization Nuclear
score 99.97
confidence value 0.99
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMSI1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.086
NLS score -0.47
Protein Sequence >LOC_Os03g43890.1 protein
MPKATAAEEEEFRAEVEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDRAEPAGKDHSVQKMVLGTHTSDNEPNYLMLAQVQLPLDDAEADA
RHYDDDHAEIGGFGAASGKVQIVQQINHDGEVNRARYMPQNSFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLKGHNSEGYGLSWSIFKEGHLLS
GSDDAQICLWDIKANSKNKTLDALQIFKYHDGVVEDVAWHLRHEYLFGSVGDDHNLLIWDLRSPVSTKPVQSVAAHQGEVNCLAFNPFNEWVVATGSTDK
TVKLFDLRKIDTSLHTFDCHKEEVFQVGWSPKNETILASCCLGRRLMVWDLSRIDQEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAED
NILQIWQMAENIYHDEDDVPTDDPAKAP

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term intracellular
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term multicellular organismal development
4
GO Category Biological Process
GO Term regulation of gene expression, epigenetic
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Biological Process
GO Term flower development
7
GO Category Biological Process
GO Term reproduction
8
GO Category Biological Process
GO Term post-embryonic development
9
GO Category Biological Process
GO Term cell differentiation
10
GO Category Molecular Function
GO Term protein binding
11
GO Category Biological Process
GO Term biological_process
12
GO Category Biological Process
GO Term cellular component organization
13
GO Category Biological Process
GO Term DNA metabolic process
14
GO Category Cellular comBiological Processonent
GO Term plastid
15
GO Category Biological Process
GO Term cellular process
16
GO Category Biological Process
GO Term embryo development
17
GO Category Biological Process
GO Term cell cycle
Presence of Splice variants No