LOC_Os03g43860

Expression Profile

RGAP LOCUS ID LOC_Os03g43860
RAP-DB ID Os03g0639800
Function SNF7 domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 4.5

2) CELLO Prediction
localization Nuclear
score 2.064

3) NUCPRED Prediction
localization Non Nuclear
score 0.47

4) Y-Loc Prediction
localization Nuclear
score 98.52
confidence value 0.71
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsVPS2
Function assigned as per literature OsVPS2 is associated with rice immunity and cell death
Subcellular localization as per literature Multivesicular bodies (MVBs) when interacted with LRD6-6
Cells used for localization experiment Nicotiana benthamiana leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27618555
Reference of localization http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1006311
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.166
NLS score -0.47
Protein Sequence >LOC_Os03g43860.1 protein
MNIFKKKVDPKEALRTSKREMSVATRGVEREIGSLQMEEKKLVAEIKKTAKTGNEAATKILARQLVRLRQQIVNLQGTRAQIRGVATHTQAMYAGTSISA
GMKGASKAMAAMNKQMEPTKQIKVMREFQKQSNQLDMTLEMMSDAIDETLDKDEAEEETEELTNQVLDEIGVDVASQLSSAPKGRIAASNRKAESNQARN
AAPPRNNVEPESSAEVDDLERRLASLRRI

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Cellular comBiological Processonent
GO Term endosome
3
GO Category Biological Process
GO Term transport
4
GO Category Biological Process
GO Term cellular process
Presence of Splice variants No