LOC_Os03g43840

Expression Profile

RGAP LOCUS ID LOC_Os03g43840
RAP-DB ID Os03g0639600
Function LSD1 zinc finger domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 14

2) CELLO Prediction
localization Extracellular
score 3.78

3) NUCPRED Prediction
localization Non Nuclear
score 0.08

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.15
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category LSD

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsLSD2
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.065
NLS score -0.47
Protein Sequence >LOC_Os03g43840.1 protein
MQSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNADTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAP
SVKCAICHYITNTGMNTVAPTPSPMPTSSGSSYNAPPSGSSYNAPPPTSAPTSRPQNVTVVVENPMTVDEKGKLVSNVVVGVTTGK

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term signal transduction
3
GO Category Biological Process
GO Term response to biotic stimulus
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Biological Process
GO Term anatomical structure morphogenesis
7
GO Category Biological Process
GO Term cell death
8
GO Category Biological Process
GO Term response to endogenous stimulus
9
GO Category Biological Process
GO Term metabolic process
10
GO Category Biological Process
GO Term cellular process
11
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No